I purchased a "kit car," pre-finished.
It was a C-4 corvette with a "body kit" to make it look like a C-5. Other than the car already being fiberglass, sounds just like what you are describing.
There was a new nose/tail, and door skins.
The door skins were bonded(glued) to the existing doors and the edges were feathered with bondo, then painted.
With all the abuse I put the car through, the bondo started to lift, and the paint above cracked.
I did not assemble the kit, it may have been done correctly, however with the abuse I put the car through, any repeated flex of the inner (original panel) that did not match the new skin would cause problems over time no matter how properly done. Including flex from temperature variations, slamming doors, and shrinkage of the glass drying out over time.
I don't have a great picture, but you can almost see the split, if you squint and your imagination is strong.
Bottom edge of door, "vertical" part, you can see a white line, this was the split bondo covered with paint. The horizontal line is just dirty, the glass door skin overlapped.
IMO, I feel this is the problem with kits, they are designed to look cool, without any real thought to long term durability and quality. I can't think of any way to keep glass bonded to metal with a feathered edge and no future separation/splitting/lifting etc. But then again, I never went to auto-body school.